NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208032_1048268

Scaffold Ga0208032_1048268


Overview

Basic Information
Taxon OID3300025266 Open in IMG/M
Scaffold IDGa0208032_1048268 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1014
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameWest Anvers Island
CoordinatesLat. (o)-64.45Long. (o)-64.88Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000908Metagenome / Metatranscriptome841Y
F006765Metagenome / Metatranscriptome365Y

Sequences

Protein IDFamilyRBSSequence
Ga0208032_10482682F006765GGAGGMRAQVKFEWRWKEEPEGLQRAEHVIKEALIAAGYRVNGFPEVQGVWDEDKPKVVGGPWDETRLPHEMIAKVWDETEAS
Ga0208032_10482683F000908AGGAGMDQEQLKRIADAMEEILRMVKVDQERSRKYMEDKDESTS

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