NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208179_1002243

Scaffold Ga0208179_1002243


Overview

Basic Information
Taxon OID3300025267 Open in IMG/M
Scaffold IDGa0208179_1002243 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9002
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (33.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.55Long. (o)13.18Alt. (m)Depth (m)3511
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001625Metagenome / Metatranscriptome661Y
F005948Metagenome / Metatranscriptome385Y
F062835Metagenome130Y
F064800Metagenome128Y
F064804Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0208179_100224310F064804N/AMVQFYHADKLAKARDLVIIFLFGSIVIETITGIELLGAWWK
Ga0208179_10022433F062835N/AMAIKSFEIDIDGKKEIIEYEDDLLFGELEAIVNISVDLSDVTKPKVDLPKYRMNVLTKALRKAPFPIDDATAIRNLKAKTAKKIISEVMKDYPLMRFLEDWMVTFVGTPEATSSLTESTTSLPKVSDGTKDK
Ga0208179_10022435F064800GGAMYDALDDMLSLLKTKWGTTDKAGTFPEIKIIWDRKVVGLANYTQDTILLTPKRENVEYFGLYGSDFMHHVDIQIECWTYMSQDRLNDLVKEVTKIIKDNIRRTNFVDLMITGSLSQSDTYRNIWKHVLQAKYRKVNPS
Ga0208179_10022438F005948N/AMVELNHNVVSFNSDTVIKGDHGVVVGVFVTKVGTGSNKVEFRNGTTASDPVEFTIFTAAQGTYLGINRRFEDGIFADCAGSAEVTVIFK
Ga0208179_10022439F001625GGAMLSVQAALVSKLRIYSIKVTFGASDNYATNGVSADLKEGRISTLVAVIPTYTDSLREVVYDKANEKIKLYDVGGSATAPFTETPNTSSACASKVFEFLVIGY
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