Scaffold Ga0208179_1002482

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208179_1002482

Scaffold Ga0208179_1002482

Overview

Basic Information
Taxon OID	3300025267 Open in IMG/M
Scaffold ID	Ga0208179_1002482 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8417
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (81.25%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus → unclassified Acidithiobacillus → Acidithiobacillus sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	38.55	Long. (^o)	13.18	Alt. (m)		Depth (m)	3511
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F089010	Metagenome / Metatranscriptome	109	N
F095351	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208179_100248211	F095351	GGAGG	MPLVTESVVRPADQMGDGHIEDIYNNAREALYAAHINAQGGDGNYIIRAMVPYDIGEDGGTNDGPANDGNIWAETITTSGTAGFQNSKIASQTVPDNTSVCIYGLVDTSDGGQNVSQIRITSGQGVRAIWDLFPIIGSDPSVSGSVRCRTMYAMTPIIITRNMNVLVEYYIRPSNPSVTRGVEIALIGLTCEGSGGYIQP
Ga0208179_10024826	F089010	AGGAGG	MPDLYYGKTEFEPALLGGQSARLHLNATEFHDVRVVSWGYLPSHRHDFGSLTGGTASLANDCTHIDMPDGELAQYRWVIGDPAVEVEMKHPASTQQWMAQSQTTSTGANWRMRYWGVDDPIDVQKWMFKSSEFFVFEQNTPRFDLYPLAGLEGARSAQGYVEFFGFRYALERLPNGERGMVDLWVQGWPGGSL

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