NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208179_1012360

Scaffold Ga0208179_1012360


Overview

Basic Information
Taxon OID3300025267 Open in IMG/M
Scaffold IDGa0208179_1012360 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2655
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM23-C198(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.55Long. (o)13.18Alt. (m)Depth (m)3511
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003481Metagenome484Y
F006447Metagenome / Metatranscriptome373Y

Sequences

Protein IDFamilyRBSSequence
Ga0208179_10123602F003481AGGAMTTPADVQEELRLAREELARLKGTDDKSDKIQMTSGDIVRLVIAAPVVFTWLFLGSRIIISATTSQHVLSNVEPLVMTLSILTIPVTGILQSLFAAPGNGK
Ga0208179_10123603F006447AGGAMTLFEKICRMVGDRRIPSPRLPAFQMFRVGFANRHVSTVVVLAIVVSAAAVSVGLYFAIKDVASSTYNWPEPAEYQVTEAGLQTMGKKNKDYPDGTESQTLSIRLGDGARISTLRINATSLGRAGITKAFDISPASVGVTGAKAFLFVGNMTITDSSFPTFNMSESQVANLTTGMKCDGHTMSATVSPSVPEQVLSSERLSSEYLVDNSIVDRVQVFITGPSGAYVNNLILSGVKAHTGSLNLNRMRIGSLTMGPTNLIGDGSGIDSASCIIQASTEVKNISNSIVDTPILVQ
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Institute for Fundamental Biomedical Research
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