Scaffold Ga0207894_1029694

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207894_1029694

Scaffold Ga0207894_1029694

Overview

Basic Information
Taxon OID	3300025268 Open in IMG/M
Scaffold ID	Ga0207894_1029694 Open in IMG/M
Source Dataset Name	Marine viral communities from the Deep Pacific Ocean - MSP-114 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	978
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	14.5287	Long. (^o)	-118.7737	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028195	Metagenome / Metatranscriptome	192	Y
F034353	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207894_10296941	F028195	N/A	QEEIDFTKDSEYIRLFDDDDNSEEFMKEVYKKELGSSFEKVEDGVGVGTYESKS
Ga0207894_10296942	F034353	AGGAG	MNEIKDLVDTVLKNRSLTIFLAIVVVALFFGWIGG

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