NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208813_1015345

Scaffold Ga0208813_1015345


Overview

Basic Information
Taxon OID3300025270 Open in IMG/M
Scaffold IDGa0208813_1015345 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2039
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)43.49Long. (o)7.9Alt. (m)Depth (m)2455
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015264Metagenome / Metatranscriptome256Y
F017722Metagenome / Metatranscriptome239Y

Sequences

Protein IDFamilyRBSSequence
Ga0208813_10153451F017722GGAGLDTKELRNQAAALLDQAQAAVEQGEMETFQRLADEAQATMVKADEIDAAASQVRKLRGEFNQPLNSIPVTSNDVAIYNPMDTTANLKANYKPASWVKGMPAMAQPLWVQEQMGDNIKDEARFMTDTFVKWFRSPSEDMFWKTASPDEIKAMQEDTDKLLCPVS
Ga0208813_10153453F015264N/APSRATMIHGTTNQTISRAVAAALEQGYSIEQLARGVPADKFPGLRSILTETENRARLIARTEIMRCQNQTSIGFFKEQGFRHVRADDVDGDPDDTYVDPGDPYGRTCAERHGQVYTVEQAQDIDDHPNGTLNWQPMPRNYRPEE
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