Scaffold Ga0208183_1032654

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208183_1032654

Scaffold Ga0208183_1032654

Overview

Basic Information
Taxon OID	3300025274 Open in IMG/M
Scaffold ID	Ga0208183_1032654 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1112
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	39.47	Long. (^o)	11.53	Alt. (m)		Depth (m)	3514
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001034	Metagenome / Metatranscriptome	798	Y
F075975	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208183_10326541	F001034	AGGA	VTLLSTDTYEDAQYQNDAPIGKQEPIPSGVHSIELSWDRSRGYMRVIIGGKTWWFKEYLGKAVIVGTDNGRGRITLRAMARLDGEVLTMYRPPDAKPHGMVEGLERKRTHNRLCYRRSSKDWRVRDERLPWNDPDALKFVTTYVGDLSAEWNGADPIAHIYHNGTAVIDDQHICHLYDPDLSYG
Ga0208183_10326542	F075975	AGGGGG	MANMGPYLAEKYTKMIEAITNDLGNTADKLAQAQNILRALKNPDMLVDGTPLTLDRLQVMENGDIRTLPPPPEMTCIEEVTKEFVKNGKKEKEAVLASDPA

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