Scaffold Ga0208814_1000184

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208814_1000184

Scaffold Ga0208814_1000184

Overview

Basic Information
Taxon OID	3300025276 Open in IMG/M
Scaffold ID	Ga0208814_1000184 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	45505
Total Scaffold Genes	65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	59 (90.77%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	South Georgia Island
Coordinates	Lat. (^o)	-50.35	Long. (^o)	-39.82	Alt. (m)		Depth (m)	4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F045197	Metagenome	153	N
F048361	Metagenome / Metatranscriptome	148	N
F070310	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_100018436	F048361	GGA	MNKNISASLMFALVVQAAMIVWAISQMRADVDANYASIVRISADVKAVETSSVTQAVQLGKIEENIKGIKESLERMLEVMERD
Ga0208814_100018443	F045197	GAG	MCPMGTCFYEGELMIYVYVVILSMWEDGVPVYSVRAPNAVYKTEEKCQAVRELNMLYLLETSPSPTAEFRSLCVGMQFQNQKPKGDL
Ga0208814_100018462	F070310	AGGAG	MSEELKKELRMLGVLDHKVPTVETETPPIWVRDDVTFDNNGEPNF

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