NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208814_1000293

Scaffold Ga0208814_1000293


Overview

Basic Information
Taxon OID3300025276 Open in IMG/M
Scaffold IDGa0208814_1000293 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33519
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (88.68%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameSouth Georgia Island
CoordinatesLat. (o)-50.35Long. (o)-39.82Alt. (m)Depth (m)4
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022391Metagenome214N
F035083Metagenome / Metatranscriptome173Y
F047068Metagenome150N
F053660Metagenome141N
F054042Metagenome140N

Sequences

Protein IDFamilyRBSSequence
Ga0208814_10002932F035083GAGMGKVTNLRPDLSELCEDYDTIIVIGVSEDQIQIVSNMEDPDILYSMEIAKAELINAYFTADHEVH
Ga0208814_100029325F047068GAGMIKIVTDEQVHEMDIELIEQFAVYLLDGDQVGMADLIYIVEDRMTDDYLDEKQQHSLV
Ga0208814_100029334F054042GAGGMIEDQTPFIQIVYEEIEEYGLYDHKIKLFNLMEAALNGMSGKARKEIDELWLEIQEYKVQLAIPPTDEELVLRHPTMSV
Ga0208814_100029336F022391GAGGMTQGDYVKVSSTNEVEAKLKHLEARIRDWNYQSPLTIKLESFTDPTSLSQDALFNIWCRTIAESMKAKTPSADAEAWKLWLKHKFLGTYSVKVGRESIEGQVYATPKGKAKMSQFMHSVLVFADTKLNVRLSVPKNSEYVRVRQNELEKESKQKAKKESNATSGDREGSSATPETRSSKGEQQLGLL
Ga0208814_100029337F053660AGGAGMRARKYEMKPTPHAPSKYHPNTTFKKWIGDRTDLGLVKGKTYTWTEFGAAVGIVASSMRGRVRGAKEVSDCHMWKAGERKPKAEWGITTITRCETNADKLSQKYLRMKL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.