Scaffold Ga0208814_1000321

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208814_1000321

Scaffold Ga0208814_1000321

Overview

Basic Information
Taxon OID	3300025276 Open in IMG/M
Scaffold ID	Ga0208814_1000321 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	32212
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	46 (93.88%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	South Georgia Island
Coordinates	Lat. (^o)	-50.35	Long. (^o)	-39.82	Alt. (m)		Depth (m)	4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008578	Metagenome / Metatranscriptome	331	Y
F012508	Metagenome / Metatranscriptome	280	Y
F081780	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_100032126	F012508	AGGA	MSKIKEELIGYEYEPSEWIEPEAQNMVNELIEYQVYCMPLSELMARVTKQMTDEYYNNSYENMTNKYNEVFK
Ga0208814_100032132	F081780	GGAGG	MVKFMKNKREVNTLVKQLKAGGFTVTDSDGWVKAIDDDDTEVMMAMPHSNGSYMLKLNDNYFA
Ga0208814_100032139	F008578	AGGA	MVSNRELENVVSQVNAKFEELFNKLAQLENQIADNVGAKDGNAKKRKSKG

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