Scaffold Ga0208814

Basic Information
Taxon OID	3300025276 Open in IMG/M
Scaffold ID	Ga0208814_1000431 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025276 Open in IMG/M

Scaffold ID

Ga0208814_1000431 Open in IMG/M

Source Dataset Name

Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26846
Total Scaffold Genes	52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (38.46%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

26846

Total Scaffold Genes

52 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (38.46%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (37.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	South Georgia Island
Coordinates	Lat. (^o)	-50.35	Long. (^o)	-39.82	Alt. (m)	Depth (m)	4
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

South Georgia Island

Coordinates

Lat. (^o)

-50.35

Long. (^o)

-39.82

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010650	Metagenome / Metatranscriptome	301	Y
F012872	Metagenome / Metatranscriptome	276	Y
F013704	Metagenome / Metatranscriptome	269	Y
F024891	Metagenome / Metatranscriptome	204	Y
F025860	Metagenome / Metatranscriptome	200	Y
F031821	Metagenome / Metatranscriptome	181	Y
F083262	Metagenome / Metatranscriptome	113	N
F099890	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_10004311	F031821	N/A	PPMGLHTFGSSSAIAEWTEACKALHPEYFPEPSEDDLV
Ga0208814_100043111	F025860	GAG	MNTENLYQIIDDLENFAHQIGSEWMEERVAMLEAQIAALEINQSTK
Ga0208814_100043114	F012872	N/A	MDLHFEGNKLYYLEKEAELGKVLDHLSKYLGHQQEITDDQLWDVFNICMDTMAIFRHITDYFTTLDRSILDARIKNGKLKQDLYELQRENIQLQKALEGYMDEF
Ga0208814_100043116	F013704	GAGG	MKTLTNVIVDIVDYKRKMLDGQRFEINGMEFVCIETHAYFQTRVDDEESDIDVGSSFYIVRNTSTGKLHKIPFSKIINKEKEITWKT
Ga0208814_100043127	F010650	N/A	MKKMNQFLRIANARLRKIYPNKQQRISWAAKMYVRWINRKEE
Ga0208814_100043135	F099890	GAG	MNLYDKLNDEQIKILDQQMILYPYSAKALTRGLKENRYCLDLTLNQCHRVASTFGFECTLVNIINFFE
Ga0208814_100043147	F024891	N/A	MIIVEENSTAAIKMYLRDFTTESFEIEIISEDQRKEVVDTALSGTYDDFRKLLAFSLDVSALVAENFYVVKIWEVGKIKLLSQDRMYIIPVGSDKATYAPKLATTQKTMNNEFKIYGE
Ga0208814_10004319	F083262	N/A	MRDPNIDRYLHEMAMLFQNLGKDSTPQQRVDAKLEEWKYLGMIADIDAEYAQRLGYA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208814_1000431

Overview

Ecosystem & Geography

Associated Families

Sequences