NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208814_1005644

Scaffold Ga0208814_1005644


Overview

Basic Information
Taxon OID3300025276 Open in IMG/M
Scaffold IDGa0208814_1005644 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4825
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameSouth Georgia Island
CoordinatesLat. (o)-50.35Long. (o)-39.82Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019558Metagenome / Metatranscriptome229Y
F057687Metagenome136N
F068131Metagenome125N

Sequences

Protein IDFamilyRBSSequence
Ga0208814_10056441F068131N/AYEGAKSFGLVFTLSNRRLQMTTSSALPKVSMDQSFKLGRKSFTMAEAIDHVVAVYDKLNVLQEEGLDCYREIGNFILQTKSLFGGDKVAYGKFIAGTNFSNEAVSQPDKYDSEFIATHWNKIQTLNKSGKLNSLTPSRIRQILQEEYPEIKKKPKASKGAGNTSKGKGKPEASKGSKEPVVNKNTMFETIIPKDEKELAEQVYDLMESKGFKRAEFTKELAKLFK
Ga0208814_100564410F057687GGAMNTILKGYTMTKVKQTEAKEMTPQEKWKMKRDAADAERNYSADQLTDSQRKVLMDAFIAIRNADCSCHEMFMADVSDMIAIDKAEYQLRSEFPQLTQEASGDLICTCED
Ga0208814_100564411F019558GAGGMSVMAYEVMLELDGVRKIITLDDTYPAVRDWGTATEFAIRMVQHDHPYADVEFMDCAEYVHEEYTKYGYIHEAPIILQ
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