NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208814_1006826

Scaffold Ga0208814_1006826


Overview

Basic Information
Taxon OID3300025276 Open in IMG/M
Scaffold IDGa0208814_1006826 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4325
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameSouth Georgia Island
CoordinatesLat. (o)-50.35Long. (o)-39.82Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017161Metagenome / Metatranscriptome242Y
F077487Metagenome117N
F087740Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0208814_10068261F077487N/AAELAFAKATNTYFNGSYSDQYSRYTDSDMQNQIEIRSQKRKDYNFLLIRPGEKKARYVLVIDEGDFEFTLIGWFPFINDMPEKLSNFGFVNRPPAYKIEIKELYPLADLKT
Ga0208814_10068265F017161N/AMQKVGKPKDWILFKHDPAHEKSINIDFSGTINLTNGFKGTVLASKGVSKNGNTKFLRLFKQTGVLFLGDEGKFTGDMTDVEIGGKKALIGWSNDKSETPHISGYANEPQVKEEAKDDKAP
Ga0208814_10068269F087740AGAAGMTRQTKKTFQLLSILKKCREKSKFGLAKKLISKYKIDKKKLEESYYD
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