NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208180_1016874

Scaffold Ga0208180_1016874


Overview

Basic Information
Taxon OID3300025277 Open in IMG/M
Scaffold IDGa0208180_1016874 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2259
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)39.48Long. (o)7.24Alt. (m)Depth (m)2766
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068933Metagenome124N
F078831Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0208180_10168743F078831GAGMVQTNESIYGKHRAFTSSQQNLVLPGAKSKYLEAVSVTINGLQNGSTATTVANALGLVNPLEIDVGGIPQIRVRLADMYAMDMLWLQHNPLTKISGGDNQEWIVNQIVYPCWFPPSRAEATLTATYAAVTNADNTEVSITSEYLDGIPRNEALYYSEFSKNTDGVDSSSFGNWTQTTNLVGNMTGMLFNSPTIPGGSTLMEDGTIQQVRIQGNGNTLLVYEWSEIQNPGIFNGQMFNALEESPATTGILDNYRWLSLAKEPIPAGTRVQTDIMAGVDSSAIRTVQVQQVPFRGR
Ga0208180_10168745F068933N/ALHRELLMPKALPGMKGTIGRPSDLIPVHAAGQLKGYWKNVKHKPATGFQVSKKNKFKD
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