Scaffold Ga0208180_1021216

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208180_1021216

Scaffold Ga0208180_1021216

Overview

Basic Information
Taxon OID	3300025277 Open in IMG/M
Scaffold ID	Ga0208180_1021216 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1947
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	39.48	Long. (^o)	7.24	Alt. (m)		Depth (m)	2766
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015264	Metagenome / Metatranscriptome	256	Y
F017722	Metagenome / Metatranscriptome	239	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208180_10212161	F015264	N/A	MALERGYSIEQLSRGVPDDKFPGLRSILTETENRSRLIARTEIMRTQNQTTVGFYKEQGFGFVRADDVDGDADDTYIDPGDPYERTCAQRHGQIYSLEDAGNIDDHPNGTLNWQPMPRNYRPEETA
Ga0208180_10212163	F017722	AGGAG	LDTKELRAEAGALLDQAQVAINEGEIETFQRLADEAQATMEKADAADAAASQVRKLRGEFNRPLNTIPVTSQDVAIYDPMDSTARIKGDYKPASFIKGLPAMAQPLWVQDLCGDNIKDEARFMTDTFVKWLRSPSEDMFWKTASPDEIKAMQEDTDAEGGFFVPEQFINQTIHDTG

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