Scaffold Ga0208449_1020311

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208449_1020311

Scaffold Ga0208449_1020311

Overview

Basic Information
Taxon OID	3300025280 Open in IMG/M
Scaffold ID	Ga0208449_1020311 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2099
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	39.48	Long. (^o)	7.31	Alt. (m)		Depth (m)	2520
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012506	Metagenome / Metatranscriptome	280	Y
F028618	Metagenome / Metatranscriptome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208449_10203111	F012506	N/A	PGIRSILGETENRSRLIARTEIMRSQNQSTIGFFKEQNFVYVQADDVDGDPDDTYIDPGDPYGRTCAERHGQIYTLEDAQNIDDHPNGTLNWMPMPRGYKPEGTV
Ga0208449_10203113	F028618	AGGAG	LNTHNMRKEANALLGQAETSLKDGEVEQFERMIADATTTMAAADKIDQAASQLKVLQGEFSRPTNSVPIADKDVAAYDATDTGAINKASYKPSAWVKGLPAMAQPLWVQEQMGHTQKEEAQFQTDTFVKWLRSPSDDVFWKTASADEVKAMQEETDAEGGFFVPEQFISQT

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