NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208449_1073271

Scaffold Ga0208449_1073271


Overview

Basic Information
Taxon OID3300025280 Open in IMG/M
Scaffold IDGa0208449_1073271 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)860
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)39.48Long. (o)7.31Alt. (m)Depth (m)2520
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010737Metagenome300N

Sequences

Protein IDFamilyRBSSequence
Ga0208449_10732712F010737N/AMVTTITRTYDSTPTDKTYFSLTDNMSSSSLGNIQTPQGSTRISRIDVAMDAPDTKGVVLACRLLGSNMSEQNLSLAGSCGDVADAGGTAQFNMIPTNFSVAGVNNIDLQVAFQFTTGTPTASSLSVTLY

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