NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207881_1073660

Scaffold Ga0207881_1073660


Overview

Basic Information
Taxon OID3300025281 Open in IMG/M
Scaffold IDGa0207881_1073660 Open in IMG/M
Source Dataset NameMarine viral communities from the Deep Pacific Ocean - MSP-97 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)526
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)9.2013Long. (o)-163.4956Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004867Metagenome420Y
F033219Metagenome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0207881_10736601F033219GGAMADNKFPPIINGSYKKDTPNKDIGYQKWEVRKVHEVVMVYEIVAKTKEDAENLLEKEECIKVETIDGYGKTARETITGNSMSDFSGEEPVEWK
Ga0207881_10736602F004867N/AFKITFYPQNINYDFDEHQVQSTTRFAKWDNDCGFVFKPKTKNVSPFVKYFDVEKNGYRTATTKYRAVSISLDNNHYTWNGI

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