NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208030_1029966

Scaffold Ga0208030_1029966


Overview

Basic Information
Taxon OID3300025282 Open in IMG/M
Scaffold IDGa0208030_1029966 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1696
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.38Long. (o)4.65Alt. (m)Depth (m)2720
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001227Metagenome742Y
F012859Metagenome276Y

Sequences

Protein IDFamilyRBSSequence
Ga0208030_10299662F001227AGGAGMVRRKARRTRRRKTFSINLLETGAGLAFLDAANAGQAAQSFIKGDINGGLNTLSNAFKTNKNDFIKIGVGTLAAKLVLGSMGGSKVLGSVGPLKLRA
Ga0208030_10299664F012859AGGAMVRNRRGLAPWSLAREAGIESATVDGTIEVPQYVQPVLDTGFVDEKGDWKGAKSNDKDFIALQIDAAIANGGNFLSPSQNADGTWPLDMTGFRDIFIAIKPTNGGAYAIHAVMGPDDLSFANLSPVNPAALLRGNYGRREGGQVMQDLFKDDNETLTADVWNIFSITESLANQKLLQFKFTNSSGGSSDIETAFMRLV

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