NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208315_1078948

Scaffold Ga0208315_1078948


Overview

Basic Information
Taxon OID3300025286 Open in IMG/M
Scaffold IDGa0208315_1078948 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)812
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.09Long. (o)11.46Alt. (m)Depth (m)1200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027809Metagenome193N
F035722Metagenome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0208315_10789481F035722GAGMTLGPSKSVSRAKDGKIYGWSGSYGLTSSAVTLLDYTNPAAFYLTRVTLGIDWSSISAGEVLS
Ga0208315_10789483F027809N/AGSNMSEQNLSLAGSCGDVADAGGTAQFNMIPTNFSVVGVNNIDLQVAFQFTSGTPTASSLSVTLYFE

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