NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208315_1104985

Scaffold Ga0208315_1104985


Overview

Basic Information
Taxon OID3300025286 Open in IMG/M
Scaffold IDGa0208315_1104985 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)667
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.09Long. (o)11.46Alt. (m)Depth (m)1200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015219Metagenome256Y
F019475Metagenome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0208315_11049851F019475N/ACQQCGKKLYKNYGSRGYLATPDNQYHHKIFSTEEKRNNFERDELPENAFDIDRWSYSENNFGLRYYTPQQSRDGLFHSQSCFYQWHENHRDEIERLIRDMGEWKNPN
Ga0208315_11049852F015219GGALTVKPESNFGREIMKNLSHVQWTRIENRHGGGVPDLYGIYGGQAIWLELKCIKQNSIKLSPLQISWNYNNFRHGGKNYYIVQDTRSKVIKIYDGDKGRELAKYGFNYEESIAVIE
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