NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208316_1041810

Scaffold Ga0208316_1041810


Overview

Basic Information
Taxon OID3300025296 Open in IMG/M
Scaffold IDGa0208316_1041810 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_231 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)998
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.48Long. (o)10.16Alt. (m)Depth (m)2304
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010737Metagenome300N

Sequences

Protein IDFamilyRBSSequence
Ga0208316_10418102F010737N/AMVTTITRTYDSTPTDKTYFSLTDNMSSSSLGNIQTPQGSSRISRIDVAVDAPDTKGFVLACRLLGSNMSEQNLTLAGSCGDVADAGGTAQFNMIPTNFSVAGVNNIDLQVAFQFTTGTPTASSLSVTLYFE

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