Scaffold Ga0208181_1026338

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208181_1026338

Scaffold Ga0208181_1026338

Overview

Basic Information
Taxon OID	3300025300 Open in IMG/M
Scaffold ID	Ga0208181_1026338 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1346
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	39.48	Long. (^o)	5.24	Alt. (m)		Depth (m)	2820
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005219	Metagenome / Metatranscriptome	408	Y
F072748	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208181_10263381	F072748	AGGAG	MTAYNVGDHIRIAGRCGCVEPVKSAKGSIPALALRESSACWHGPRTRVIRVFQAGDYLLENGAG
Ga0208181_10263382	F005219	N/A	MTSGEKQPIRPIFSAIRRTCPKCGGEMSVELLRPDPHDAPVPFLVCPCGYWEAAPADIEAELEDRPRMPGF

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