Scaffold Ga0208181_1042728

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208181_1042728

Scaffold Ga0208181_1042728

Overview

Basic Information
Taxon OID	3300025300 Open in IMG/M
Scaffold ID	Ga0208181_1042728 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	967
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → environmental samples → uncultured Mediterranean phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	39.48	Long. (^o)	5.24	Alt. (m)		Depth (m)	2820
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F066849	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208181_10427281	F066849	N/A	NAVTGCVSHRSVVRVPAGAVYTDASGNQVSTNRVMLAYVSPLGDIRLFDGNNDVVISTPVKDTMKTMLYAQRTKIHSVHDIENSHVIFYFPGPTPSGEQAECNHAVVWNYRWGVWYVWPDMPMAASTTVETSSDTQIVLTGEAQTAKGGFCYEFFDGDSFDGSNIPARWITKVIYGTDNSWSVRSPQQMMAYVKRYRWLDVIAEADSDVTLTIEWMSGNASDDAVSKGGTSKSLAPIGLQLITDDGNGIDTDDGSNITLPFDSVQQIISLEGTNGDFIQDVGCRIRISDDAQNGSWSIEGMTLGYQVLPGATRRLQ

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