NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208181_1087366

Scaffold Ga0208181_1087366


Overview

Basic Information
Taxon OID3300025300 Open in IMG/M
Scaffold IDGa0208181_1087366 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)605
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)39.48Long. (o)5.24Alt. (m)Depth (m)2820
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004651Metagenome / Metatranscriptome429Y
F049761Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0208181_10873661F004651N/AIGAVLDGFKNTLGHLEQEAYRRIEERGATSIPSETYICEMETGFKYDQPSFAPLKEIFNEVDLKKCLTPAHTDEVKVADKWATVTVKSLAVKYGAEALRIVENAQTETRGRLKFARRETR
Ga0208181_10873662F049761GGAGGMTTAIESQYHFTAAIQSKGKQQNRDGWAMVVDWKLPGSKFDLTLYGQDWETVQGFEVGETAIITINQGNLKANKDGRYSTD

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.