Scaffold Ga0208450_1073343

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208450_1073343

Scaffold Ga0208450_1073343

Overview

Basic Information
Taxon OID	3300025301 Open in IMG/M
Scaffold ID	Ga0208450_1073343 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	790
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	43.02	Long. (^o)	8.37	Alt. (m)		Depth (m)	2641
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F074856	Metagenome	119	Y
F100957	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208450_10733431	F074856	AGGA	MDKKTITGWALQVTWSDGKDETLLDIDDDTASCVDTFLTELEQERNNANKK
Ga0208450_10733432	F100957	AGGA	MLTKNKIKQINKDGWYWAEGSVVMCNFGDPDTFTFCMCRNHEGAKAVASGLNVLDWNEMHEEHGAMADPDTELVKEKSL

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