NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209172_10000143

Scaffold Ga0209172_10000143


Overview

Basic Information
Taxon OID3300025310 Open in IMG/M
Scaffold IDGa0209172_10000143 Open in IMG/M
Source Dataset NameHot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)216542
Total Scaffold Genes225 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)167 (74.22%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)60.1987Long. (o)-125.5127Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039696Metagenome163Y
F060676Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0209172_10000143115F060676GGAMQLRTARVCLDCEEVHDAQQCPTCASESFAFLTRWVPVPERRSRPRPPEAANPEVVETYRELLSPKPHSGWRLLRRGALGLALFGVAGWVWRRNTRREATSRDKDPAAGGNRGTGS
Ga0209172_10000143119F039696GAGMIPPVDVELLGLIAVIIAVLVVSTRFHSQSWRGRPNWQYRRVFSVGFGGLLFFVSGLLGLDLSRSHGLFQGATWVEGPVWWQVGLGSILLTLAIYWALRIPPPQRRQAH
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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