Scaffold Ga0209172_10000729

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209172_10000729

Scaffold Ga0209172_10000729

Overview

Basic Information
Taxon OID	3300025310 Open in IMG/M
Scaffold ID	Ga0209172_10000729 Open in IMG/M
Source Dataset Name	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	85536
Total Scaffold Genes	81 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	66 (81.48%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Canada: British Columbia
Coordinates	Lat. (^o)	60.1987	Long. (^o)	-125.5127	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000573	Metagenome / Metatranscriptome	1016	Y
F017864	Metagenome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209172_1000072918	F000573	GGAGG	MSVVAWLRRLVVSIGIGGTSYVIMLAIMVASVVYDRELEPVISFAFDTGRSIVNGLDALVSGSHWGQVAVNHLRERVNMTHVVLSIPAILIATIIVGIPFNALLGGTHSALQRIAIGLVSVPATVVLAVVLFTFNALVPEVYAVLLRFADWVWQASLNALAASGDTIPGARKLTNAARQGFSGHHYVIMALCSMVASFLVNALFAWATRHQRQASAMAA
Ga0209172_1000072932	F017864	N/A	MSKAQIVLEIVTLLQGTPVAEFARENLFADAGGVVVRCAERARLTTPEGQACKRAMATALRRYSYRFTMPQLEVLADLYATALEQLEPEAIGRVRERMCDGGSEEAREDAAAAAAVCERLSMAH

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