Scaffold Ga0209343_10030599

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209343_10030599

Scaffold Ga0209343_10030599

Overview

Basic Information
Taxon OID	3300025311 Open in IMG/M
Scaffold ID	Ga0209343_10030599 Open in IMG/M
Source Dataset Name	Groundwater microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_0.2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5401
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location Name	Rifle, Colorado, United States
Coordinates	Lat. (^o)	39.53	Long. (^o)	-107.78	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022846	Metagenome	212	Y
F047595	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209343_100305994	F022846	GAGG	MSIAAPDELGRELSDLAFGIIEQNWLAEHIGKAVDVKGLDPMQASAAEWELTYLILFAITSGCGTCAATDRDRTTAALKAFHSTFLKQIGEQVGQDIANAHEKNLVPRYRLYDQTLEGEDTTHPYKTRYQRLGEAAAIQLLGKPIEDPQAADIFRETIKVIFTEVREAAIKVMQHPQVAPVQGDA
Ga0209343_100305995	F047595	AGGAG	MDFDIGSNQYRNATNGIEIDGMAQFSFEHNRRYDEMMLRGLIFDQRGSLVAQIAENSLCMNIQGEFEMQSEYPVVKLLRRETEDVLLEVKFLDKDRVQIHKARLYSGKGTPFEVTPTLWKLKDDTHSGENVDCDEKPVSLK

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.