Scaffold Ga0209323_10005498

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209323_10005498

Scaffold Ga0209323_10005498

Overview

Basic Information
Taxon OID	3300025314 Open in IMG/M
Scaffold ID	Ga0209323_10005498 Open in IMG/M
Source Dataset Name	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8472
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Oscillatoriaceae → Oscillatoria → Oscillatoria nigro-viridis	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location Name	Rifle, Colorado, United States
Coordinates	Lat. (^o)	39.53	Long. (^o)	-107.78	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012744	Metagenome / Metatranscriptome	277	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209323_100054986	F012744	GGAG	MSHIDDCPVRRSQFLTRGSLFQNPAAKVYVFDHIRHGTALEILSRASAACRFESPHTAVSEYQWREYFGLPVMSLSAAANYYGLNISEIEHHIRKKNTYAGGLFESGMLVLREAALESARDMGHTAEIQQGSVLLPPRAVLHLCLYLRPVPAVAATVNAFWDYVLAEKLHESTPADWHYTSSQHVEIECSRIEEQRLSECLTEAKERKLYPYIQHFGRQTCFEAWARLFTYEGEFPPARGSFYVERQDWFDRVSHLSLWR

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