NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207697_10199477

Scaffold Ga0207697_10199477


Overview

Basic Information
Taxon OID3300025315 Open in IMG/M
Scaffold IDGa0207697_10199477 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)880
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameKellogg Biological Station, Michigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009777Metagenome / Metatranscriptome313Y
F047540Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0207697_101994771F009777N/AIPVEGHDIVAGVEIVGTKQLDVSRSGWDERHQRLRANGADLKLGWPLESQTLCRFKEVLRDEMREKGFLDVEITHDTRPTFGNRRDLTLEITIVEGKRTRRAAQTGRLLSPAERCMR
Ga0207697_101994772F047540N/AMATRIFVAAFILVGLVAPFAFEAAVIPGYVYFVGPPLDLDAPRNGQVVVHIDVLGKQPPDIARIRVTDIATGAIVWDVKPTTPTSECWNRCWNLTLSAGSNPASFTAGHQQFNASIPQKSSFSLTRGTAYLLVVWDSKGRVAHERFTL
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