NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209697_10068731

Scaffold Ga0209697_10068731


Overview

Basic Information
Taxon OID3300025316 Open in IMG/M
Scaffold IDGa0209697_10068731 Open in IMG/M
Source Dataset NameFreshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2555
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameFinland: Lake Alinen Mustajarvi
CoordinatesLat. (o)61.5637Long. (o)22.044Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005200Metagenome408Y

Sequences

Protein IDFamilyRBSSequence
Ga0209697_100687311F005200N/ADHQCWAGDDWLHWHHLHVYIGSQVMDPITVFAACKAAHAGIRECIDLYQEFKKDGKDVGDIVGDIGKNLGSFFTHQETLKEAEKEEKLKPLDKKTSINEEAMNRIMRQEQIQRMETELREMIIYQVGMPGLWSKFVDMREVVRKEREKIEREQKKPLNWLHSRGGSSLINGKSGQHYALA
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