NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209697_10228423

Scaffold Ga0209697_10228423


Overview

Basic Information
Taxon OID3300025316 Open in IMG/M
Scaffold IDGa0209697_10228423 Open in IMG/M
Source Dataset NameFreshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1031
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameFinland: Lake Alinen Mustajarvi
CoordinatesLat. (o)61.5637Long. (o)22.044Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F089755Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0209697_102284231F089755N/AFDVTIDPVSASHRRIMLLAKHPGAEYSVVLSNNGVSGVGQGVNTPGTDDHYRDYFGILCLIRDLQNNTIGEDIKPTDFVGLSRFDIADYIQAKFASWEMPRFEFPELSGNAKAHGWDYLLKYRVSFAESIAGNVKGLQSTGWKYAIAGGLNHELLTSLNEKYLEYFSVPSKKQAFLSWLPTTKYSRSGVMEKLFFLFQDNPSTVQYRLVVIINFTDGSHKVVNATQQAVFPAFTVMEFKVGFDHLNLVNAEMGKTVQSWEVYLMDSNDEMLSERRVFYNDTRVFENEKVFFYRNSFSAYDTFRFLGKSELNLEYERLIGSTVKEENYSFFNAPSKQFSAKETE
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