NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209519_10035080

Scaffold Ga0209519_10035080


Overview

Basic Information
Taxon OID3300025318 Open in IMG/M
Scaffold IDGa0209519_10035080 Open in IMG/M
Source Dataset NameSoil microbial communities from Rifle, Colorado, USA - sediment 13ft 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2780
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location NameRifle, Colorado, United States
CoordinatesLat. (o)39.53Long. (o)-107.78Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022846Metagenome212Y
F047595Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0209519_100350801F047595AGGAGMDFDIGSNQYRNATNGIEIDGMAQFSFEHNRRYDEMMLRGLIFDQRGSLVAQIAENSLCMNIQGEFEMQSEYPVVKLLRRETENVLLEVKFLDSNRVQIHKAKLYSGKGTPFEVTPTL
Ga0209519_100350802F022846GAGGMPIAAPDELGRELSDLAFGIIEQNWLAEHIGKAVDVKGLDPMQASAAEWELTYLILFAITSGCGTCAATDRDRTTAALKAFHSTFLKQIGEQVGQDIVNAHEKNLVPRYRLYGQTLEGEDTTHPYKTRYQRLGEAAAIQLLGKPIEDPQAADIFRETIKVIFTEVREAAIKVMQHPQVAPVQGDA
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