NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209519_10279446

Scaffold Ga0209519_10279446


Overview

Basic Information
Taxon OID3300025318 Open in IMG/M
Scaffold IDGa0209519_10279446 Open in IMG/M
Source Dataset NameSoil microbial communities from Rifle, Colorado, USA - sediment 13ft 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)971
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location NameRifle, Colorado, United States
CoordinatesLat. (o)39.53Long. (o)-107.78Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001850Metagenome626Y

Sequences

Protein IDFamilyRBSSequence
Ga0209519_102794461F001850N/ASFGGSAALITGDDGETGFTISRYNDLSTDGRVRRLTLYALDSYYYPVGTPGIVAPFAGTALGLARVAESASICVLITCSDTVSTTSQLALAFGLGVRVNVGDHAAATVQGRFLQVPGSQIQALEAVANASVMFGSARKGEFLEGTLGPAASFLIPISGSLRGRAPFAGVRFRRDTKKAGTVGLEIAFAPLKVTESCSTGCEPNAVLFAPGYEASVRPAWGRVYGEVGLLIAGVYTQGPDRGVAQGLHGGLGVDLYSGRLMWNVNSRLLWLRRNSGENVLGVQVGVSLSPRIGGLRPISTH
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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