NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208615_100568

Scaffold Ga0208615_100568


Overview

Basic Information
Taxon OID3300025330 Open in IMG/M
Scaffold IDGa0208615_100568 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE12Jun07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1364
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022576Metagenome213Y
F032114Metagenome / Metatranscriptome180N

Sequences

Protein IDFamilyRBSSequence
Ga0208615_1005681F022576GGAGMTIDLNEHMERKKQERHIAAYDAIGEAVDGLTLGTVLHILSAFTKATLDQMTEPDRSQAAMVFSSVIMESNAKPEKPVQ
Ga0208615_1005684F032114GGAGMIHFLGGIQSITATYLVWSRYKTASMPDWEWVNDLPDGVSQVAHWVIKRIPK

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