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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025337 Open in IMG/M |
| Scaffold ID | Ga0208252_100016 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jun07 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 31297 |
| Total Scaffold Genes | 32 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (31.25%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Crystal Bog, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F030662 | Metagenome | 184 | Y |
| F038058 | Metagenome | 166 | Y |
| F048735 | Metagenome | 147 | N |
| F055388 | Metagenome / Metatranscriptome | 138 | N |
| F080806 | Metagenome / Metatranscriptome | 114 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208252_10001615 | F080806 | N/A | MVHHLDTAATGAIGFAAPIAAATLSLDATLDLEMRIASMAVGILVGLASFAKLCYDIWADHKNREK |
| Ga0208252_10001621 | F055388 | N/A | MAQNGVTFSSCQDVDTLFREARTYYNPFFIKKMAINSIYYGRLETETWPLNTLPTQKAFRFGRGWYNPDQPWQQVQSGRCIQNADDVQFETIAHPGTESYTFSLFTKAMRTDWYQLTDFMYRLFPQEEMDHIMATNVNITKNVHEEFARSNWIGGAGHKWVPISNGQSLVSCVAEDDQMFIVQPFEGTNEGSYNMGYVYVKLPASQLTNIGLLSLDTLDDILINLQREDDAYRLDVSEAAGRPLLEVIVPDSRVLRQLWQYAKQSGGWWESVSDFDDKQLQYSLGIDRVIGNYAFCNDINGVRLNVDWTYNASLLTFNANDPSTWPRLVRVLPYVPVATELGCKYVQNPAYNNADFGITNPWVNKAMIKWISPSQSGIGEAQGMTQNYAGDWEWKNPDWECNIKRDQGFFWNQFRMGMQFQDPTLMHSILHRLNTSKLIIPAPCTLSASYVPQYTPDCYVCSSVVNQPI |
| Ga0208252_10001626 | F030662 | N/A | VRLKDKNGPIPGGLWYEYSDDKGNTYRVNGMDTVFGKQFAQKVSSDMTINNVQVPDNLEYLIEQQVCSRIPSQYYWQEAGDKVANVIHRFANLGDRVAASLGVQTNLEQTAKGCTACQKRRQAMNQALG |
| Ga0208252_10001628 | F048735 | N/A | MDYNGICLDLPKDTTYGLSFGENVPQFIRELTAYRLTRGEFGRRERVKNGIKLEHTDLKNPAQHMVNCFQLIYGNDVLLQSQGIANNYALDIIDLFCNENDWGIAGCASSGKTFSVAACIVIDWLCAPDCTSTYVASTSLDASEDRLWGKVCTLYRIAMRNLQSKYGKDAAIGNLVEYRRMIVFESIDTKDTERDYTNAIKAVAFPKGGEGQKAVDNMRGRKNERVRVFLDELAEMDLYCLNVRSNFTAGNDDVLFGGMANPSNTANNPHTELCEPDDPMGWNAVNRYTKRWKTRTGIALHLSGEESPNLQAPNAEIPPFRNFLTYKKMEATLKICYGNKNALEYWRNVYGWWPDSSVELTIFSKQFIQGCDIAWEPVWSNRTKVVCGFDPAFTAGGDRCAATFCRFGANDTGRNVGFYLGTKEYTSSVGEVFEESIAMQVVQDCLEYGVHPRDFGLDISGDGGKMMRAIIIEWSKFNPEAMFIFPISSMGMPTERKISNLDKRTCKEAYDRLVTEYWFAVHTAMSTRSLVGIDMDKNSQVIAELCSRLYYHKGRKVAVEKKLDMKQRIKKSPDLADSLTYAVQMLRRAGLEFTFEDEEAESLDIVEIRDWEQRLIHSKNSPEEKAMDDDWGYGGNGVDEDGF |
| Ga0208252_1000166 | F038058 | N/A | MLASSNLNPPPRVAVPPRNNMASHGVQYTRDNTERGIVFDHAMPQPMQRVQIKGDIPTIRAYKDARTARIKAIGEANQKAVSVGSANESGMGANANPFHADWI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |