NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208866_1000401

Scaffold Ga0208866_1000401


Overview

Basic Information
Taxon OID3300025340 Open in IMG/M
Scaffold IDGa0208866_1000401 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE20Aug07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2797
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031758Metagenome / Metatranscriptome181N
F040464Metagenome / Metatranscriptome161N
F043229Metagenome / Metatranscriptome156N

Sequences

Protein IDFamilyRBSSequence
Ga0208866_10004012F031758AGAAGMSANKSQEKELLIKNLFKLINEIFIVKPGVTFDEIILQVRNTKKRILEIDPNWKLGNKYFHYVHKVISLMDEINTLDEINLEKQRKTFRKILKTTKTLRQTDQLWRMNPIIILNFLECNSKIVMSAGQISKKPREQVPLDQVNK
Ga0208866_10004013F043229N/AMTQKGVKLEIETIEECGCEPHECYCRHNKEYKKSMKIRNLTTMIGLIEADAPLSFRALERICELKKKIKRIDPEWILIDEVKLLEHQVLSQLDIIDHTIPWNSARNKLRYIELCQSINKLKIIHPDWEMDLEDSKNHYICRCCSCLEKRKMYQQTLDETRSEKSTPYKGSRNKFSN
Ga0208866_10004015F040464N/AMDKKTRSYKNKVYTFKHRTMNPMVSLEWLRRGYAFVGQTQEHLKDILKELTLKMRTMTDKEIERDLRKGLKVTGDITLELSRFVRQGLEQKRTFKGLLGTLIETKNWALIKLILEVTEELKERNSSSSLLLSIAKEILRELQRIQAIIPIKELKQMETSLIDIQYWKLTRHLRI
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