Scaffold Ga0209670_100332

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209670_100332

Scaffold Ga0209670_100332

Overview

Basic Information
Taxon OID	3300025349 Open in IMG/M
Scaffold ID	Ga0209670_100332 Open in IMG/M
Source Dataset Name	Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter B (PS_B) MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	29975
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (87.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F063403	Metagenome / Metatranscriptome	129	N
F084856	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209670_10033211	F084856	N/A	MERGDAMSDLSNLMIVTHLYTKEHAEALSLTLSEWRKLAPSSQIIVGYYQSRFQPSDFSNLMQDDAVEFVPVSNSSYGAAYDTLLERTIGKPILILAPYAVPKEWFIGANGSLLKWFESYAIIGRYKQPRILVSDAILMPLVAPVIVELGRLQMDCIAVREDVPRSVGYHEWWFGSILVRARPGAFLLYNALAAGYPVLTLPRNCNPVRYVKSETQMDKKIR
Ga0209670_10033223	F063403	AGGAGG	LVMEQSFDRQEALRALRVAIRSVRRTPIRIPFGDDERFFIEIRIPRFAERLDLQMAAELFLGGYESSERLLRSLPTIITAFRLPAEDDDGNFVQAIYNAEPLPDLQVINLTPTDLFSDDSAFNATPALMTVIITTLMTLSGRTQAVAAGVNALLELFPGTNQNSADLLEQGSSGMSGDQ

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