NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0207995_102653

Scaffold Ga0207995_102653


Overview

Basic Information
Taxon OID3300025352 Open in IMG/M
Scaffold IDGa0207995_102653 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Deep Lake, Antarctica - Antarctic Deep Lake Metagenome 022AM (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3198
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameDeep Lake, Antarctica
CoordinatesLat. (o)-68.5627Long. (o)78.1882Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047173Metagenome150Y
F075520Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0207995_1026531F047173N/APKTLEIMRVLETKIYTIEEHPNKNKCFDYIRENWHDLNQHSVDEVIESIKNLSNVIGGSYDYSIGQVPDRGEFISFRDFSYDALNELSADDCPLTGVCWDIDLIEGLKNENLKGVLESLHNSTEYVYSDEGLNEICEANEYEFDEDGSIQ
Ga0207995_1026537F075520AGGLSNKTNSPQIRGVKTKIMKKTYYILNTKTDQSFDTMEMKFYSNNWEPEMEEDKEYLEGLINRDPERFENCIITTI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.