NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208383_1000007

Scaffold Ga0208383_1000007


Overview

Basic Information
Taxon OID3300025357 Open in IMG/M
Scaffold IDGa0208383_1000007 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)65153
Total Scaffold Genes108 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)85 (78.70%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008414Metagenome333Y
F012096Metagenome283Y
F017424Metagenome / Metatranscriptome241Y
F042065Metagenome159N
F048010Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0208383_100000731F017424N/AMKDFISEIIRRVRDEQKKLAETLTAGSNVNSYEDYQRLVGRHEGLKEALDIIDDILREDEEES
Ga0208383_100000732F048010GAGGMEKELGYKKAYKMTGTPGYAGGPDQKVDNGASGSHRDNNWKIGASQSKMAKSQKVGPDKNLNEIGGGNFY
Ga0208383_100000754F042065AGGMWQTVEEFRDWYCAAGMPIRPPFLNPVFHTDNAMSLCLFRKGKFQVELYIAEPNSTSPPHTHPGVESAFVYLTGNIQFNLEGRDNPDVQQWQKPQQDGTHMLFKSRVSSPDGIPHWLGIGPEGGAFLSFEYWKDKEPVSVTVNWDGELVGDEHAKTLQSANEKL
Ga0208383_10000078F008414AGGAMSQVIIHANFNGGVSVTVPTGELPINEVLAKDCPAGAIIVDASTLPQGADSSFFDAWELSGSTVSVNFEKAKAIKLAQFNAKAVEEAQKRQLNTLAGIPNAVSDADFTASLSAGRASIASATTTAELVAI
Ga0208383_100000786F012096GGAGGMSTWLVAAMGLVYFVVAIDQVIKGAPWFGVMFLGYAIGNLGLTMQVK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
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