NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208383_1000121

Scaffold Ga0208383_1000121


Overview

Basic Information
Taxon OID3300025357 Open in IMG/M
Scaffold IDGa0208383_1000121 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15110
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (8.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021232Metagenome219N
F046110Metagenome151N
F048063Metagenome148N
F055384Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0208383_100012112F055384N/AMITKPTNTFLAAEFPTWIDLKVGTVMEVRKEGQTGYLVDHPIIEGDCVVQKCNCIEVRDEVECCVTI
Ga0208383_100012113F021232N/AMKMKQLKQTYIIFTASDTVYCTAESYDLANEIIEADGLVDAVVQQVNHITNIKEGIPVTISYENTSTYDCTSDDVNDVRHKDHY
Ga0208383_100012114F046110N/AMTNRFDESLMHLHDQLSSITNHNVPVTLVNTIEQQVLLIQARQAYVTGHKQSYELILRELMEHIQLKLTGKN
Ga0208383_100012117F048063N/AMLILKCNVTGKEVKWTNKAIIDAKIKQYGSLEAFKAAYVSKGANKKAKVKSTLLKSNEVNLMKSICEEGIKLSPQSIDKSLSTKHMSNEEYVKHYEAKVKALEEAGASAAEIGWMKQRLERWRGVAA
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