Scaffold Ga0208504_1000035

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208504_1000035

Scaffold Ga0208504_1000035

Overview

Basic Information
Taxon OID	3300025358 Open in IMG/M
Scaffold ID	Ga0208504_1000035 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	37612
Total Scaffold Genes	59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	54 (91.53%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001201	Metagenome / Metatranscriptome	749	Y
F004204	Metagenome	448	Y
F050052	Metagenome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208504_100003515	F001201	AGG	MCKDACEMYKEGRQIVTDIAKEVDGVIKDVKTVQKKAKGLLGFLSAVFGKKEEVQQEVAQPVKKVKKKKEPPPEFDENLIYQQVSDALIKFFQAYNGLKNYVKEQEEFALHANNDEGQEAAIKITIANLQMEKLNTELSDYMVYHVPHELKDLYTRVNQQIGHIANVQALARREEMLKERRAKWQRQQKADLIKGRMVATAITVLMLMWIWLMILSMTHSPSY
Ga0208504_100003523	F004204	AGG	MVVYDPRGHTWDSWCAHMAELFAPNQLGTLPEENWREWASGMQGIGYFVQSGVPDHRGFPTWQTWAESLVGIMSLQKGQK
Ga0208504_100003553	F050052	AGGA	MIYTTFKQWVKGRFLEIREPRKKAYSKDELALIEMGWGYGYDAGVLAERGECAQIADLWSVSYPHPSKTIAEQIRKRGQE

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