NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209739_100646

Scaffold Ga0209739_100646


Overview

Basic Information
Taxon OID3300025360 Open in IMG/M
Scaffold IDGa0209739_100646 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC3_ASED (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13527
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (92.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameJoseph's Coat, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023054Metagenome / Metatranscriptome211Y
F028973Metagenome190Y
F057170Metagenome / Metatranscriptome136N
F058700Metagenome / Metatranscriptome134N

Sequences

Protein IDFamilyRBSSequence
Ga0209739_10064621F058700AGGMSEEEMTADDVMDYLRSALINGWLEGLSGSDFPPWADAYEQIQMLEDMEGDDDILNDDETIDHLSRLSDIDYDTFKEMWDRLTNEQKNEILGSVIHEMALIGMEWLFKDIAYDVTHDEKLNKAMGKVVEAAKDYLNKRISYNELMDRIANIFWPNEEDKKSTAYKDFLDGAGLADYINEDELNEIIKEYLLEKIGRRS
Ga0209739_10064623F057170GAGGMTTRGVIEVFNSQNEPLSRIYVHGDMYLKNGVMCEVAKFLEKRYLVNGIPPDGYFDVINGMDNLAALVTAHLIQWYTKVIRRFVKAKKNDLAAGLVYIYPFSWDLKDTDIDYLYQLYPMEDEDKLTYRGGARKAVDVIRVVVKKLEKEDFDMQKADWNKKEFVNIFDGPLREFTKQYCKA
Ga0209739_10064624F028973GAGGMAQVTEVEAQKVIDDIIRQLEEHHVNGDWDKFFEEDVIDVLLMVTPDKEDILGFSILLSYGRPTVEFLCDRGDGKIIYSYGDIEVKKDVDPEICDDIINYLDS
Ga0209739_1006469F023054AGGGGGMEETNELRAQALIDSVALLLLRYGCITDGEAEGLLDWALEEGILTAKGLRNLILGLEDRALSCDNKDVAMAAVNLLREAWKELNGSMG
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