NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209739_100994

Scaffold Ga0209739_100994


Overview

Basic Information
Taxon OID3300025360 Open in IMG/M
Scaffold IDGa0209739_100994 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC3_ASED (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10130
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameJoseph's Coat, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028973Metagenome190Y
F032562Metagenome179N
F076880Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0209739_1009941F028973N/AEAQKVIDDIIRQLEEHHVNGDWDKFFEEDVIDVLLMVTPDKEDILGFSILLSYGRPTVEFLCDRGDGKIIYSYGDIEVKKDVDPEICDDIINYLDS
Ga0209739_10099410F032562AGGAGGVSEGKVTLLSEDRLNIRTYADTNHNVTRYYAEVEVNGRKVTSEKHASLDVFKDFERTVEELYRKAEVLKDLSSPRAADALAEDMINDIAELVLLTRALSDKVKSWSPWKPQEP
Ga0209739_1009945F076880AGGTGGMAQVKEEAKAVRAFVSRIVKGYRAFLRNGDAFPKESWAHAYDLAGSLYYGANIYSDSNYETELIRRLAQVSYNDFDELKAIWDSFSESQKKKVLGQLAYAIAKIGYEELLEAIANSWEFKLNADKRRQIIDAFKSYIANGHDRMRLAVALTNIFWPNEEDRKESEDRVRALWDGLWLDGFILWREVEKLIVKHILNVETVKTVEGS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.