NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209739_107133

Scaffold Ga0209739_107133


Overview

Basic Information
Taxon OID3300025360 Open in IMG/M
Scaffold IDGa0209739_107133 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC3_ASED (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2283
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameJoseph's Coat, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038745Metagenome / Metatranscriptome165Y
F051572Metagenome / Metatranscriptome144N

Sequences

Protein IDFamilyRBSSequence
Ga0209739_1071331F051572AGGMSSGRVNGGPFAEVWTFADVVLKGGCKKSVQFLNTRLELCVLAALIKTAPAGSMVKLRPEIVRSLVEELAAAAGRDRERIRNALLKKAGEVMAQLRRELGDKTPAEALLAKLAELFLKELEA
Ga0209739_1071332F038745N/AMDRAVVVVCGELMQISLAFSAYYPLCSGGPPCAYAEAVERLIRRAASARGAEELIEVMEGRVKLEELGLPDPALEVLAKELGPEPRWLDALAASFFRLYLGLHRRRRVDGRDLAFALCLWAQKRRREDPRNPLWSAAELEPDRLYTEEEAREALEVEEALFRRLWRRALAFHRGEKAYGFQLILAALSLMATPPRSV
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