NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209739_109000

Scaffold Ga0209739_109000


Overview

Basic Information
Taxon OID3300025360 Open in IMG/M
Scaffold IDGa0209739_109000 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC3_ASED (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1910
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameJoseph's Coat, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070317Metagenome / Metatranscriptome123Y
F077502Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0209739_1090003F070317AGAAGGMTQATASNMSPLEELKELDLEKVVKDAQEGEICVVNKIYKGKLTDLLPLVRDPANLSQRAMEFIQRRGEDIFYLIQCTTREGRNVKLLVRQSFDPKSTFYNLMKKYKSIKVGDEINVFYNPEKRRYDFLL
Ga0209739_1090004F077502GAGMTGQGTDVAHIILWIEKNLPEEGKLSELIDNIFSLIQEIILNNLSQGRQPISFTSVREIADAFKEMVYKSVEQSIGTLTEEVKEQIDAYFFKKLSEIYSKYYE
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