NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209739_112523

Scaffold Ga0209739_112523


Overview

Basic Information
Taxon OID3300025360 Open in IMG/M
Scaffold IDGa0209739_112523 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC3_ASED (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1463
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameJoseph's Coat, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080245Metagenome115N
F081547Metagenome / Metatranscriptome114Y
F087442Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0209739_1125232F081547AGGAGMPYLRGVFINFGEETYYLSCGIVKGGSLDAETYTISQPELMMVRLGRDLYIVTSELKLLIPVEPIKVLLSSETSKVYNEALSQGNEVRPA
Ga0209739_1125233F087442GAGGMMREGLVKAGNLVIDCKPCYVAGTGFTKDDIYVVSEGTVVFKWYDKIAVITVGEEGTKLNLLDIIDVRFLVERNENCMVTKL
Ga0209739_1125234F080245N/AVIFVWSARVTIPGFREEIFVSPALINMYAEITEGVYEVGMFMVPHRGHSLLFLPTMVIKVDEELLKNLEQTSIEDLNTPLNTIDHVFT
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