NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208647_1000558

Scaffold Ga0208647_1000558


Overview

Basic Information
Taxon OID3300025362 Open in IMG/M
Scaffold IDGa0208647_1000558 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10070
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAce Lake, Antarctica
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037979Metagenome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0208647_100055815F037979N/ASSELSEGGKLIQIGISTLDGNNRSYTMNPGECQWSEQAFAVHGITREKLSTSLSPEIVDVKLYEFLVELGADTKRRGKTIPVGFNVGAFDMPFVKDSLPKSYSLFSRKTVDLNALCFALDYSVDNGHVVNAETWKKRAKAYAVEKIGMENQHDAGWDSLMHIYCFEFLRGVMS
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