Scaffold Ga0208505

Basic Information
Taxon OID	3300025366 Open in IMG/M
Scaffold ID	Ga0208505_1000021 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH15Jul08 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025366 Open in IMG/M

Scaffold ID

Ga0208505_1000021 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH15Jul08 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	55371
Total Scaffold Genes	79 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	29 (36.71%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (44.44%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

55371

Total Scaffold Genes

79 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

29 (36.71%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (44.44%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Crystal Bog, Wisconsin, USA

Coordinates

Lat. (^o)

46.0072

Long. (^o)

-89.6063

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F030662	Metagenome	184	Y
F038058	Metagenome	166	Y
F039455	Metagenome	163	Y
F048735	Metagenome	147	N
F055388	Metagenome / Metatranscriptome	138	N
F072994	Metagenome / Metatranscriptome	120	Y
F080806	Metagenome / Metatranscriptome	114	Y
F089761	Metagenome	108	Y
F091224	Metagenome	107	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0208505_100002117	F080806	N/A	MHHIDTAATGAIGMTAPIAAAAISFDPTLDLELRIISMAIGIFVGLASFAKLAYDLYADHKNRKK
Ga0208505_100002118	F072994	N/A	MITLTSPITISPAPVHGKPLKPTTLTSIDYSVSYDNSQQQAVAQLKGVNVGITLWSQHTTPPYSSIGQFTDADTDARLSELLNVKSGNDSIQAAILALFPQPYKQK
Ga0208505_100002123	F055388	N/A	MAQNGVTFSSCQDVDTLFREARTYYNPFFIKKMAINSIYYGRLETETWPLNTLPTQKAFRFGRGWYNPDQPWQEVQSGRCIQNADDVQFEFIAHPGTESYSFSLFTKAMRTDWYQLTDFMYRLFPQEEMDHIMATNVNITKNVHEEFARSNWIGGAGHKWVPISNGQSLVSCVTPDDQMFIVQPFEGTNEGSFNMGYVYVKLPASQLNNIGLLSLDTLDDILINLQREDDAYRLDVSEAAGRPLLEIIVPDARVLRQLWQYAKQSGGWWESVSDFDDKQLQYSLGIDRVIGNYAFCNDINGVRLNVDWVYNASLPTFNVNDPTTWPRLVRVLPYVPVTTELGCKYVQNPAFNYADFGITNPWVNKAMIKWISPSQSGIGEAQGMTQNYAGDWEWKNPDWECNIKRDQGFFWNQFRMGMQFQDPTLMHSILHRLNNAQLVIPAACNLTPNYTPQYTPDCYVCSDVITEPI
Ga0208505_100002128	F030662	N/A	MKLKNPNDAIPGGLWYQYSDDKGNTYRVNGMDLTFGRQFIQKVKSDMTNKNVAIPENLEYLVEQQICQRIAGQYCWQEAGDAVANVIHKFAHLGDKVASTFGINAQLETRAKNCPSCQRRREALNKAIG
Ga0208505_100002129	F048735	AGG	MEYNGLSLQPPQDTTYGLSFLETVPQFIRELTAYRLTRGEFGRRERIKMGIKLDQCGLLNPAQHMVNCFQLIYGNDVLLHSQGIPNNYALDIIDLFCNENDWGIAGCASSGKTFSVAACIVIDWLCAPDCTSTYVASTSLDASEDRLWGKVCTLYRIAMRNLQAKYGKDTSIGNLVEYRRMIVFESIDTKDTERDYTNAIKALAFPRGGEGKRSVENTRGRKNARMRLFLDELAEMDLYALDTRVNLGANPDFIFGGMANPSNTANNPHTELCQPDDPLEWDAVNRYTHKWTTRTGVALHLSGEDSPNFKLPNAEVPPFDRFLTIQGEANTLKRCYGNKNALEYWRNVYGWWPDSSVELTIFSKQFIQACDIAWEPTWSDRTKVVCGFDPAFTAGGDRCAATFCRYGPNDTGRRVGFYLGTREYNSSVGDVFEESIAMQLVKDCVEYGVHPRDFGLDISGDGGKMLRAIIIEWGKFHPEAMFIHPISSMGMPTERKISSLDKRTAKEAYDRRVTESWFQVHTAMSTQSLLGINVEKHTALVNELCSRLYFHKGRKVAVEKKLDMKQRIKKSPDLADSLTYAVEMLRKAGLEFTFEEEQESLDILEIRDWEEKLVYSKNGVGKEVEDQDDWGYGGSSCDEDGF
Ga0208505_100002140	F089761	AGGA	MTMRYPESDFTRPSIMLLRSLVHELGEGVSKEPGGYGGLKMERKRLGDILKEHIDDPRLSDWDRDMIKGL
Ga0208505_10000215	F038058	N/A	MASHGVQYTVDKTERGVVSDHATPQPMQRVQIRNDIPTIRAYKDARTARIKAIGESSQSAFSVGGPANESGMGKNANPFNCDWL
Ga0208505_100002169	F091224	AGGA	MRSAIDNILNELGMDTPDLPPINKQEALEMGLIKGRDKPKTCACGKSAFSSESKCDAAIKHRLKQGFGGTGFLRAYECDIERGNWHMSSVNHKNKL
Ga0208505_100002173	F039455	GAG	MPSVHVNTGRYGDIIAFLPVLLNEYKETGINPRLVIAKEYADILDGVSYVDPLVWDGAFEDVSGSIQFAKQFTDDVKTSQVVGISDVIVSQVYGNSHAPKIVCDSFLKDAWKLADKLDLWPSQPPLVFDRRDKKREQTLTKGLGKDKPWLVVSTGGVSSPFPYSDLLWEILNHSLPEFHIVDLAKIKAERMYDLLGIMDHSNTAAMILTDSGPLHLSYASTKPVHALVADSPNLWHGTAWRPSYASYTRYKNFPREITRILDLIRNPPVKPKYPNIIHVYQRTPWESGEEKRRNAVAKKTWDKIGWVDLGLDDSCFVRNSSNVIPNEKKNIPMIKDMIRMACIGREDRDVIVLTNTDTCVASNIVERLVGNMPAYAYRYDFNKIDGPIPDDEIIYGTKYAGCDLFAFRVGYWRRNHHLFPDMVLGRESWDRIMRELFKLSQGRELYSAIYHEKHDSFWESAVNINSDPSNLRNRMLARKWLQERNMPLEELESRNYEGKFKKITKKR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208505_1000021

Overview

Ecosystem & Geography

Associated Families

Sequences